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» A Mechanization of Phylogenetic Trees
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CSB
2004
IEEE
109views Bioinformatics» more  CSB 2004»
14 years 2 months ago
Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as maximum parsimony (MP) and maximum likelihood (ML). Conventional MP heuristics for produc...
Usman Roshan, Bernard M. E. Moret, Tandy Warnow, T...
ISAAC
2009
Springer
147views Algorithms» more  ISAAC 2009»
14 years 5 months ago
Computing a Smallest Multi-labeled Phylogenetic Tree from Rooted Triplets
Abstract. We investigate the computational complexity of a new combinatorial problem of inferring a smallest possible multi-labeled phylogenetic tree (MUL tree) which is consistent...
Sylvain Guillemot, Jesper Jansson, Wing-Kin Sung
DM
2007
84views more  DM 2007»
13 years 10 months ago
The topology of spaces of phylogenetic trees with symmetry
Natural Dowling analogues of the complex of phylogenetic trees are studied. Using discrete Morse theory, we find their homotopy types. In the process, the homotopy types of certai...
Axel Hultman
GECCO
2003
Springer
14 years 4 months ago
Optimizing the Order of Taxon Addition in Phylogenetic Tree Construction Using Genetic Algorithm
Phylogenetics has gained in public favor for the analysis of DNA sequence data as molecular biology has advanced. Among a number of algorithms for phylogenetics, the fastDNAml is c...
Yong-Hyuk Kim, Seung-Kyu Lee, Byung Ro Moon
BMCBI
2007
95views more  BMCBI 2007»
13 years 11 months ago
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Roger A. Craig, Li Liao