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» A Method for Similarity-Based Grouping of Biological Data
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TSMC
2008
136views more  TSMC 2008»
13 years 7 months ago
Learning Relational Descriptions of Differentially Expressed Gene Groups
Abstract-- This paper presents a method that uses gene ontologies, together with the paradigm of relational subgroup discovery, to find compactly described groups of genes differen...
Igor Trajkovski, Filip Zelezný, Nada Lavrac...
BMCBI
2008
128views more  BMCBI 2008»
13 years 7 months ago
SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically drive
Background: Many programs have been developed to identify transcription factor binding sites. However, most of them are not able to infer two-word motifs with variable spacer leng...
Fabrice Touzain, Sophie Schbath, Isabelle Debled-R...
BMCBI
2007
147views more  BMCBI 2007»
13 years 7 months ago
Statistical analysis and significance testing of serial analysis of gene expression data using a Poisson mixture model
Background: Serial analysis of gene expression (SAGE) is used to obtain quantitative snapshots of the transcriptome. These profiles are count-based and are assumed to follow a Bin...
Scott D. Zuyderduyn
ISBI
2007
IEEE
14 years 1 months ago
Validation and Comparison of Analytical Q-Ball Imaging Methods
Q-ball imaging (QBI), introduced by D. Tuch, reconstructs the diffusion orientation distribution function (ODF) of the underlying fiber population of a biological tissue. An anal...
Maxime Descoteaux, Peter Savadjiev, Jennifer S. W....
BMCBI
2010
129views more  BMCBI 2010»
13 years 7 months ago
LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships
Background: Biological knowledge is represented in scientific literature that often describes the function of genes/ proteins (bioentities) in terms of their interactions (biointe...
Adriano Barbosa-Silva, Theodoros G. Soldatos, Ivan...