342 search results - page 36 / 69 » A New Alignment-Independent Algorithm for Clustering Protein... |
NIPS
2008
13 years 10 months ago
2008
We present a new family of linear time algorithms based on sufficient statistics for string comparison with mismatches under the string kernels framework. Our algorithms improve t...
BMCBI
2007
13 years 8 months ago
2007
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
IPPS
2006
IEEE
14 years 2 months ago
2006
IEEE
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
TCBB
2008
13 years 8 months ago
2008
Abstract-- Many statistical measures and algorithmic techniques have been proposed for studying residue coupling in protein families. Generally speaking, two residue positions are ...
BMCBI
2005
13 years 8 months ago
2005
Background: Beta-barrel transmembrane (bbtm) proteins are a functionally important and diverse group of proteins expressed in the outer membranes of bacteria (both gram negative a...