342 search results - page 9 / 69 » A New Alignment-Independent Algorithm for Clustering Protein... |
BMCBI
2010
13 years 7 months ago
2010
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
BMCBI
2004
13 years 7 months ago
2004
Background: Grouping proteins into sequence-based clusters is a fundamental step in many bioinformatic analyses (e.g., homology-based prediction of structure or function). Standar...
BMCBI
2008
13 years 7 months ago
2008
Background: Non-homology based methods such as phylogenetic profiles are effective for predicting functional relationships between proteins with no considerable sequence or struct...
SC
2003
ACM
14 years 22 days ago
2003
ACM
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
NAR
2008
13 years 7 months ago
2008
Protein sequences are the most important source of evolutionary and functional information for new proteins. In order to facilitate the computationally intensive tasks of sequence...