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BMCBI
2007
169views more  BMCBI 2007»
13 years 7 months ago
Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and i
Background: Gene expression microarray and other multiplex data hold promise for addressing the challenges of cellular complexity, refined diagnoses and the discovery of well-targ...
Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Orto...
EVOW
2007
Springer
14 years 1 months ago
Bio-mimetic Evolutionary Reverse Engineering of Genetic Regulatory Networks
The effective reverse engineering of biochemical networks is one of the great challenges of systems biology. The contribution of this paper is two-fold: 1) We introduce a new meth...
Daniel Marbach, Claudio Mattiussi, Dario Floreano
ENTCS
2006
180views more  ENTCS 2006»
13 years 7 months ago
Mobile Synchronizing Petri Nets: A Choreographic Approach for Coordination in Ubiquitous Systems
The term Ubiquitous Computing was coined by Mark Weiser almost two decades ago. Despite all the time that has passed since Weiser's vision, ubiquitous computing still has a l...
Fernando Rosa Velardo, Olga Marroquín Alons...
BMCBI
2008
146views more  BMCBI 2008»
13 years 7 months ago
Rank-based edge reconstruction for scale-free genetic regulatory networks
Background: The reconstruction of genetic regulatory networks from microarray gene expression data has been a challenging task in bioinformatics. Various approaches to this proble...
Guanrao Chen, Peter Larsen, Eyad Almasri, Yang Dai
WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
14 years 2 months ago
Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models
Abstract. Computational inference of transcriptional regulatory networks remains a challenging problem, in part due to the lack of strong network models. In this paper we present e...
Xiuwei Zhang, Bernard M. E. Moret