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» A New Approach to Protein Structure Mining and Alignment
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BMCBI
2007
93views more  BMCBI 2007»
13 years 8 months ago
SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition
Background: Predicting a protein’s structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing ne...
Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, W...
BMCBI
2010
121views more  BMCBI 2010»
13 years 8 months ago
Knowledge-based annotation of small molecule binding sites in proteins
Background: The study of protein-small molecule interactions is vital for understanding protein function and for practical applications in drug discovery. To benefit from the rapi...
Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoema...
BMCBI
2010
162views more  BMCBI 2010»
13 years 8 months ago
Moara: a Java library for extracting and normalizing gene and protein mentions
Background: Gene/protein recognition and normalization are important preliminary steps for many biological text mining tasks, such as information retrieval, protein-protein intera...
Mariana L. Neves, José María Carazo,...
CONSTRAINTS
2008
182views more  CONSTRAINTS 2008»
13 years 8 months ago
Constraint Programming in Structural Bioinformatics
Bioinformatics aims at applying computer science methods to the wealth of data collected in a variety of experiments in life sciences (e.g. cell and molecular biology, biochemistry...
Pedro Barahona, Ludwig Krippahl
KDD
2001
ACM
203views Data Mining» more  KDD 2001»
14 years 8 months ago
Ensemble-index: a new approach to indexing large databases
The problem of similarity search (query-by-content) has attracted much research interest. It is a difficult problem because of the inherently high dimensionality of the data. The ...
Eamonn J. Keogh, Selina Chu, Michael J. Pazzani