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BMCBI
2010
198views more  BMCBI 2010»
13 years 9 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
PDP
2010
IEEE
14 years 1 months ago
hwloc: A Generic Framework for Managing Hardware Affinities in HPC Applications
The increasing numbers of cores, shared caches and memory nodes within machines introduces a complex hardware topology. High-performance computing applications now have to carefull...
François Broquedis, Jérôme Cle...
IPPS
2005
IEEE
14 years 2 months ago
Automatic Support for Irregular Computations in a High-Level Language
The problem of writing high performance parallel applications becomes even more challenging when irregular, sparse or adaptive methods are employed. In this paper we introduce com...
Jimmy Su, Katherine A. Yelick
IPPS
2002
IEEE
14 years 1 months ago
Compile/Run-Time Support for Thread Migration
This paper describes a generic mechanism to migrate threads in heterogeneous distributed environments. To maintain high portability and flexibility, thread migration is implement...
Hai Jiang, Vipin Chaudhary
ISCA
1994
IEEE
117views Hardware» more  ISCA 1994»
14 years 1 months ago
Evaluating Stream Buffers as a Secondary Cache Replacement
Today's commodity microprocessors require a low latency memory system to achieve high sustained performance. The conventional high-performance memory system provides fast dat...
Subbarao Palacharla, Richard E. Kessler