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» A New Similarity Measure among Protein Sequences
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BMCBI
2007
91views more  BMCBI 2007»
13 years 9 months ago
A machine learning approach for the identification of odorant binding proteins from sequence-derived properties
Background: Odorant binding proteins (OBPs) are believed to shuttle odorants from the environment to the underlying odorant receptors, for which they could potentially serve as od...
Ganesan Pugalenthi, E. Ke Tang, Ponnuthurai N. Sug...
BMCBI
2008
154views more  BMCBI 2008»
13 years 9 months ago
Extension of the COG and arCOG databases by amino acid and nucleotide sequences
Background: The current versions of the COG and arCOG databases, both excellent frameworks for studies in comparative and functional genomics, do not contain the nucleotide sequen...
Florian Meereis, Michael Kaufmann
CIARP
2010
Springer
13 years 7 months ago
On Improving Dissimilarity-Based Classifications Using a Statistical Similarity Measure
The aim of this paper is to present a dissimilarity measure strategy by which a new philosophy for pattern classification pertaining to dissimilaritybased classifications (DBCs) ca...
Sang-Woon Kim, Robert P. W. Duin
BMCBI
2006
85views more  BMCBI 2006»
13 years 9 months ago
Identification of physicochemical selective pressure on protein encoding nucleotide sequences
Background: Statistical methods for identifying positively selected sites in protein coding regions are one of the most commonly used tools in evolutionary bioinformatics. However...
Wendy S. W. Wong, Raazesh Sainudiin, Rasmus Nielse...
SIGIR
2005
ACM
14 years 2 months ago
SimFusion: measuring similarity using unified relationship matrix
In this paper we use a Unified Relationship Matrix (URM) to represent a set of heterogeneous data objects (e.g., web pages, queries) and their interrelationships (e.g., hyperlinks...
Wensi Xi, Edward A. Fox, Weiguo Fan, Benyu Zhang, ...