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» A New Similarity Measure among Protein Sequences
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BMCBI
2007
131views more  BMCBI 2007»
13 years 9 months ago
On the detection of functionally coherent groups of protein domains with an extension to protein annotation
Background: Protein domains coordinate to perform multifaceted cellular functions, and domain combinations serve as the functional building blocks of the cell. The available metho...
William A. McLaughlin, Ken Chen, Tingjun Hou, Wei ...
BMCBI
2004
94views more  BMCBI 2004»
13 years 9 months ago
GASP: Gapped Ancestral Sequence Prediction for proteins
Background: The prediction of ancestral protein sequences from multiple sequence alignments is useful for many bioinformatics analyses. Predicting ancestral sequences is not a sim...
Richard J. Edwards, Denis C. Shields
KDD
2010
ACM
272views Data Mining» more  KDD 2010»
13 years 7 months ago
Scalable similarity search with optimized kernel hashing
Scalable similarity search is the core of many large scale learning or data mining applications. Recently, many research results demonstrate that one promising approach is creatin...
Junfeng He, Wei Liu, Shih-Fu Chang
CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
14 years 26 days ago
High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment
One goal of the structural genomics initiative is the identification of new protein folds. Sequence-based structural homology prediction methods are an important means for priorit...
Christopher James Langmead, Bruce Randall Donald
BIOINFORMATICS
2000
149views more  BIOINFORMATICS 2000»
13 years 9 months ago
MaxSub: an automated measure for the assessment of protein structure prediction quality
Motivation: Evaluating the accuracy of predicted models is critical for assessing structure prediction methods. Because this problem is not trivial, a large number of different as...
Naomi Siew, Arne Elofsson, Leszek Rychlewski, Dani...