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» A New Similarity Measure among Protein Sequences
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BMCBI
2006
136views more  BMCBI 2006»
13 years 9 months ago
Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis
Background: Recent, rapid growth in the quantity of available genomic data has generated many protein sequences that are not yet biochemically classified. Thus, the prediction of ...
Aijazuddin Syed, Chris Upton
BMCBI
2006
161views more  BMCBI 2006»
13 years 9 months ago
Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome
Background: Automatic annotation of sequenced eukaryotic genomes integrates a combination of methodologies such as ab-initio methods and alignment of homologous genes and/or prote...
Alan Christoffels, Richard Bartfai, Hamsa Srinivas...
LION
2009
Springer
114views Optimization» more  LION 2009»
14 years 3 months ago
Substitution Matrices and Mutual Information Approaches to Modeling Evolution
Abstract. Substitution matrices are at the heart of Bioinformatics: sequence alignment, database search, phylogenetic inference, protein family classication are based on Blosum, P...
Stephan Kitchovitch, Yuedong Song, Richard C. van ...
BMCBI
2008
127views more  BMCBI 2008»
13 years 9 months ago
MetaMine - A tool to detect and analyse gene patterns in their environmental context
Background: Modern sequencing technologies allow rapid sequencing and bioinformatic analysis of genomes and metagenomes. With every new sequencing project a vast number of new pro...
Uta Bohnebeck, Thierry Lombardot, Renzo Kottmann, ...
ICASSP
2007
IEEE
14 years 3 months ago
Genomic Network Tomography
This paper considers the problem of learning cellular signaling networks from incomplete measurements of pathway activity. Cells respond to environmental changes (e.g., starvation...
Michael G. Rabbat, Mário A. T. Figueiredo, ...