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BMCBI
2010
132views more  BMCBI 2010»
13 years 7 months ago
Data structures and compression algorithms for high-throughput sequencing technologies
Background: High-throughput sequencing (HTS) technologies play important roles in the life sciences by allowing the rapid parallel sequencing of very large numbers of relatively s...
Kenny Daily, Paul Rigor, Scott Christley, Xiaohui ...
COMPGEOM
1998
ACM
13 years 11 months ago
Matching 2D Patterns of Protein Spots
A new algorithmic approach to comparing 2D patterns of protein spots obtained by the 2D gel electrophoresis technique is presented. Both the matching of a local pattern vs. a full...
Frank Hoffmann, Klaus Kriegel, Carola Wenk
SODA
2001
ACM
86views Algorithms» more  SODA 2001»
13 years 8 months ago
Pattern matching for sets of segments
In this paper we present algorithms for a number of problems in geometric pattern matching where the input consist of a collections of segments in the plane. Our work consists of ...
Alon Efrat, Piotr Indyk, Suresh Venkatasubramanian
ICC
2007
IEEE
137views Communications» more  ICC 2007»
14 years 1 months ago
A Novel Algorithm and Architecture for High Speed Pattern Matching in Resource-Limited Silicon Solution
— Network Intrusion Detection Systems (NIDS) are more and more important for identifying and preventing the malicious attacks over the network. This paper proposes a novel cost-e...
Nen-Fu Huang, Yen-Ming Chu, Chi-Hung Tsai, Chen-Yi...
DAC
2003
ACM
14 years 8 months ago
A new enhanced constructive decomposition and mapping algorithm
Structuring and mapping of a Boolean function is an important problem in the design of complex integrated circuits. Libraryaware constructive decomposition offers a solution to th...
Alan Mishchenko, Xinning Wang, Timothy Kam