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HIPC
2007
Springer
14 years 1 months ago
Molecular Dynamics Simulations on Commodity GPUs with CUDA
Molecular dynamics simulations are a common and often repeated task in molecular biology. The need for speeding up this treatment comes from the requirement for large system simula...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang ...
PARA
2000
Springer
13 years 11 months ago
Experiments in Separating Computational Algorithm from Program Distribution and Communication
Our proposal has the following key features: 1) The separation of a distributed program into a pure algorithm (PurAl) and a distribution/communication declaration (DUAL). This yie...
Raphael B. Yehezkael, Yair Wiseman, H. G. Mendelba...
HPDC
2012
IEEE
11 years 10 months ago
Work stealing and persistence-based load balancers for iterative overdecomposed applications
Applications often involve iterative execution of identical or slowly evolving calculations. Such applications require incremental rebalancing to improve load balance across itera...
Jonathan Lifflander, Sriram Krishnamoorthy, Laxmik...
ICML
2009
IEEE
14 years 8 months ago
Large-scale deep unsupervised learning using graphics processors
The promise of unsupervised learning methods lies in their potential to use vast amounts of unlabeled data to learn complex, highly nonlinear models with millions of free paramete...
Rajat Raina, Anand Madhavan, Andrew Y. Ng
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
14 years 1 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling