We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
In this paper we introduce the Range Trie, a new multiway tree data structure for address lookup. Each Range Trie node maps to an address range [Na, Nb) and performs multiple comp...
Ioannis Sourdis, Georgios Stefanakis, Ruben de Sme...
We present the Mindicator, a set implementation customized for shared memory runtime systems. The Mindicator is optimized for constant-time querying of its minimum element, while ...
This paper presents the implementation of MPICH2 over the Nemesis communication subsystem and the evaluation of its shared-memory performance. We describe design issues as well as...
At the core of contemporary high performance computer systems is the communication infrastructure. For this reason, there has been a lot of work on providing low-latency, high-ban...
Sven Karlsson, Stavros Passas, George Kotsis, Ange...