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SAC
2009
ACM
14 years 2 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
IPPS
2008
IEEE
14 years 1 months ago
Impact of multicores on large-scale molecular dynamics simulations
Processing nodes of the Cray XT and IBM Blue Gene Massively Parallel Processing (MPP) systems are composed of multiple execution units, sharing memory and network subsystems. Thes...
Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton...
IEEEPACT
2007
IEEE
14 years 1 months ago
A Flexible Heterogeneous Multi-Core Architecture
Multi-core processors naturally exploit thread-level parallelism (TLP). However, extracting instruction-level parallelism (ILP) from individual applications or threads is still a ...
Miquel Pericàs, Adrián Cristal, Fran...
ICS
2005
Tsinghua U.
14 years 1 months ago
A NUCA substrate for flexible CMP cache sharing
We propose an organization for the on-chip memory system of a chip multiprocessor, in which 16 processors share a 16MB pool of 256 L2 cache banks. The L2 cache is organized as a n...
Jaehyuk Huh, Changkyu Kim, Hazim Shafi, Lixin Zhan...
IPPS
2000
IEEE
13 years 12 months ago
Parallel Information Retrieval on an SCI-Based PC-NOW
This paper presents an efficient parallel information retrieval (IR) system which provides fast information service for the Internet users on lowcost high-performance PC-NOW enviro...
Sang-Hwa Chung, Hyuk-Chul Kwon, Kwang Ryel Ryu, Ha...