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» A Practical Algorithm to Find the Best Subsequence Patterns
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PR
2006
108views more  PR 2006»
15 years 2 months ago
Boosted discriminant projections for nearest neighbor classification
In this paper we introduce a new embedding technique to find the linear projection that best projects labeled data samples into a new space where the performance of a Nearest Neig...
David Masip, Jordi Vitrià
AIRS
2004
Springer
15 years 7 months ago
On Bit-Parallel Processing of Multi-byte Text
There exist practical bit-parallel algorithms for several types of pair-wise string processing, such as longest common subsequence computation or approximate string matching. The b...
Heikki Hyyrö, Jun Takaba, Ayumi Shinohara, Ma...
COMPLIFE
2006
Springer
15 years 6 months ago
Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra Below Noise Level
Background: The computer-assisted detection of small molecules by mass spectrometry in biological samples provides a snapshot of thousands of peptides, protein fragments and prote...
Tim O. F. Conrad, Alexander Leichtle, Andre Hageh&...
BMCBI
2002
120views more  BMCBI 2002»
15 years 2 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
SIAMDM
1998
89views more  SIAMDM 1998»
15 years 2 months ago
String Noninclusion Optimization Problems
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
Anatoly R. Rubinov, Vadim G. Timkovsky