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» A Practical Algorithm to Find the Best Subsequence Patterns
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PR
2006
108views more  PR 2006»
13 years 7 months ago
Boosted discriminant projections for nearest neighbor classification
In this paper we introduce a new embedding technique to find the linear projection that best projects labeled data samples into a new space where the performance of a Nearest Neig...
David Masip, Jordi Vitrià
AIRS
2004
Springer
14 years 24 days ago
On Bit-Parallel Processing of Multi-byte Text
There exist practical bit-parallel algorithms for several types of pair-wise string processing, such as longest common subsequence computation or approximate string matching. The b...
Heikki Hyyrö, Jun Takaba, Ayumi Shinohara, Ma...
COMPLIFE
2006
Springer
13 years 11 months ago
Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra Below Noise Level
Background: The computer-assisted detection of small molecules by mass spectrometry in biological samples provides a snapshot of thousands of peptides, protein fragments and prote...
Tim O. F. Conrad, Alexander Leichtle, Andre Hageh&...
BMCBI
2002
120views more  BMCBI 2002»
13 years 7 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
SIAMDM
1998
89views more  SIAMDM 1998»
13 years 7 months ago
String Noninclusion Optimization Problems
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
Anatoly R. Rubinov, Vadim G. Timkovsky