BMCBI 2002 - PDF Preprint Papers

BMCBI 2002

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BMCBI
2002

214views more BMCBI 2002»

Automated modelling of signal transduction networks

14 years 8 days ago

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Background: Intracellular signal transduction is achieved by networks of proteins and small molecules that transmit information from the cell surface to the nucleus, where they ul...

Martin Steffen, Allegra Petti, John Aach, Patrik D...

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Id	Views	Title	Status

1	214	Automated modelling of signal transduction networks	claim
2	195	Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study	claim
3	188	The limit fold change model: A practical approach for selecting differentially expressed genes from microarray data	claim
4	147	Expression profiling of human renal carcinomas with functional taxonomic analysis	claim
5	137	ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files	claim
6	136	Making sense of EST sequences by CLOBBing them	claim
7	134	CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomes	claim
8	133	Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach	claim
9	131	Efficient Boolean implementation of universal sequence maps (bUSM)	claim
10	129	SeqHound: biological sequence and structure database as a platform for bioinformatics research	claim
11	128	Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes	claim
12	126	RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs	claim
13	120	tacg - a grep for DNA	claim
14	119	Microarray results: how accurate are they?	claim
15	110	Identifying functional relationships among human genes by systematic analysis of biological literature	claim
16	109	Kangaroo - A pattern-matching program for biological sequences	claim
17	108	A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure	claim
18	101	Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases	claim
19	101	Match-Only Integral Distribution (MOID) Algorithm for high-density oligonucleotide array analysis	claim
20	100	An algorithm and program for finding sequence specific oligo-nucleotide probes for species identification	claim
21	99	FunSpec: a web-based cluster interpreter for yeast	claim
22	95	The functional importance of disease-associated mutation	claim
23	94	Computational method for reducing variance with Affymetrix microarrays	claim
24	89	Sources of variability and effect of experimental approach on expression profiling data interpretation	claim
25	87	Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo	claim
26	82	Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3' untranslated region	claim
27	81	Species-specific protein sequence and fold optimizations	claim
28	76	The SGS3 protein involved in PTGS finds a family	claim
29	75	Quantifying robustness of biochemical network models	claim
30	71	Universal sequence map (USM) of arbitrary discrete sequences	claim
31	66	Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis	claim
32	61	Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs	claim
33	59	NBLAST: a cluster variant of BLAST for NxN comparisons	claim
34	54	Homology Induction: the use of machine learning to improve sequence similarity searches	claim
35	51	Prediction of MHC class I binding peptides, using SVMHC	claim

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