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» A Practical Algorithm to Find the Best Subsequence Patterns
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CIBCB
2007
IEEE
14 years 1 months ago
Multiple Sequence Alignment using Fuzzy Logic
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...
ALGORITHMICA
1999
141views more  ALGORITHMICA 1999»
13 years 7 months ago
Design and Implementation of a Practical Parallel Delaunay Algorithm
Abstract. This paper describes the design and implementation of a practical parallel algorithm for Delaunay triangulation that works well on general distributions. Although there h...
Guy E. Blelloch, Jonathan C. Hardwick, Gary L. Mil...
ISMB
1996
13 years 8 months ago
Discovering Patterns and Subfamilies in Biosequences
Weconsider the problemof automaticdiscoveryof patterns and the corresponding subfamilies in a set of biosequences. Thesequences are unaligned and may contain noise of unknownlevel...
Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vi...
KDD
2008
ACM
138views Data Mining» more  KDD 2008»
14 years 7 months ago
Quantitative evaluation of approximate frequent pattern mining algorithms
Traditional association mining algorithms use a strict definition of support that requires every item in a frequent itemset to occur in each supporting transaction. In real-life d...
Rohit Gupta, Gang Fang, Blayne Field, Michael Stei...
BMCBI
2007
164views more  BMCBI 2007»
13 years 7 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason