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» A Query System in a Biological Database
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CSR
2006
Springer
15 years 8 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
ICDE
2010
IEEE
221views Database» more  ICDE 2010»
15 years 4 months ago
A generic auto-provisioning framework for cloud databases
— We discuss the problem of resource provisioning for database management systems operating on top of an Infrastructure-As-A-Service (IaaS) cloud. To solve this problem, we descr...
Jennie Rogers, Olga Papaemmanouil, Ugur Çet...
ISMB
1997
15 years 6 months ago
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
Russ B. Altman, Neil F. Abernethy, Richard O. Chen
171
Voted
NAR
2010
148views more  NAR 2010»
14 years 11 months ago
SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
The prediction of protein function as well as the reconstruction of evolutionary genesis employing sequence comparison at large is still the most powerful tool in sequence analysi...
Thomas Rattei, Patrick Tischler, Stefan Götz,...
PODS
2002
ACM
132views Database» more  PODS 2002»
16 years 4 months ago
Distributed Computation of Web Queries Using Automata
We introduce and investigate a distributed computation model for querying the Web. Web queries are computed by interacting automata running at different nodes in the Web. The auto...
Marc Spielmann, Jerzy Tyszkiewicz, Jan Van den Bus...