NAR 2010 - PDF Preprint Papers

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PDBselect 1992-2009 and PDBfilter-select

13 years 6 months ago

Download bioinfo.tg.fh-giessen.de

PDBselect (http://bioinfo.tg.fh-giessen.de/pdb select/) is a list of representative protein chains with low mutual sequence identity selected from the protein data bank (PDB) to e...

Sven Griep, Uwe Hobohm

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Id	Views	Title	Status

1	281	PDBselect 1992-2009 and PDBfilter-select	claim
2	202	dbDEPC: a database of Differentially Expressed Proteins in human Cancers	claim
3	194	AltAnalyze and DomainGraph: analyzing and visualizing exon expression data	claim
4	192	IPD - the Immuno Polymorphism Database	claim
5	189	Serial Expression Analysis: a web tool for the analysis of serial gene expression data	claim
6	184	RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes	claim
7	174	BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum	claim
8	173	The Protein Naming Utility: a rules database for protein nomenclature	claim
9	165	PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update	claim
10	159	GeneSigDB - a curated database of gene expression signatures	claim
11	148	SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters	claim
12	143	WormBase: a comprehensive resource for nematode research	claim
13	140	GUIDANCE: a web server for assessing alignment confidence scores	claim
14	135	ALTER: program-oriented conversion of DNA and protein alignments	claim
15	129	PROSESS: a protein structure evaluation suite and server	claim
16	128	AntigenDB: an immunoinformatics database of pathogen antigens	claim
17	123	Xenbase: gene expression and improved integration	claim
18	123	Discovering causal signaling pathways through gene-expression patterns	claim
19	122	ELM: the status of the 2010 eukaryotic linear motif resource	claim
20	119	3V: cavity, channel and cleft volume calculator and extractor	claim
21	117	MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore	claim
22	116	The European Bioinformatics Institute's data resources	claim
23	116	Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA	claim
24	115	ChimerDB 2.0 - a knowledgebase for fusion genes updated	claim
25	112	3D-footprint: a database for the structural analysis of protein-DNA complexes	claim
26	111	Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling	claim
27	111	JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles	claim
28	110	FlyTED: the Drosophila Testis Gene Expression Database	claim
29	107	PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences	claim
30	107	The Immune Epitope Database 2.0	claim
31	107	FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database	claim
32	107	NAPS: a residue-level nucleic acid-binding prediction server	claim
33	106	Protein Geometry Database: a flexible engine to explore backbone conformations and their relationships to covalent geometry	claim
34	106	InParanoid 7: new algorithms and tools for eukaryotic orthology analysis	claim
35	95	HexServer: an FFT-based protein docking server powered by graphics processors	claim
36	94	Saccharomyces Genome Database provides mutant phenotype data	claim
37	88	SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology	claim
38	60	GRAPE: GRaphical Abstracted Protein Explorer	claim

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