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BMCBI
2011
12 years 11 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
PLDI
2012
ACM
11 years 10 months ago
Understanding and detecting real-world performance bugs
Developers frequently use inefficient code sequences that could be fixed by simple patches. These inefficient code sequences can cause significant performance degradation and ...
Guoliang Jin, Linhai Song, Xiaoming Shi, Joel Sche...
SIGCOMM
2009
ACM
14 years 2 months ago
Crossbow: a vertically integrated QoS stack
This paper describes a new architecture which addresses Quality of Service (QoS) by creating unique flows for applications, services, or subnets. A flow is a dedicated and indep...
Sunay Tripathi, Nicolas Droux, Thirumalai Srinivas...
RECONFIG
2008
IEEE
225views VLSI» more  RECONFIG 2008»
14 years 2 months ago
A Hardware Filesystem Implementation for High-Speed Secondary Storage
Platform FPGAs are capable of hosting entire Linuxbased systems including standard peripherals, integrated network interface cards and even disk controllers on a single chip. File...
Ashwin A. Mendon, Ron Sass
MICRO
2010
IEEE
202views Hardware» more  MICRO 2010»
13 years 2 months ago
Hardware Support for Relaxed Concurrency Control in Transactional Memory
Today's transactional memory systems implement the two-phase-locking (2PL) algorithm which aborts transactions every time a conflict happens. 2PL is a simple algorithm that pr...
Utku Aydonat, Tarek S. Abdelrahman