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» A Reduced-Basis Element Method
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BMCBI
2007
148views more  BMCBI 2007»
13 years 9 months ago
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
Giulio Pavesi, Federico Zambelli, Graziano Pesole
JCB
2008
159views more  JCB 2008»
13 years 9 months ago
BayesMD: Flexible Biological Modeling for Motif Discovery
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
Man-Hung Eric Tang, Anders Krogh, Ole Winther
CVIU
2007
128views more  CVIU 2007»
13 years 9 months ago
Iterative relative fuzzy connectedness for multiple objects with multiple seeds
In this paper we present a new theory and an algorithm for image segmentation based on a strength of connectedness between every pair of image elements. The object definition use...
Krzysztof Ciesielski, Jayaram K. Udupa, Punam K. S...
JCB
2006
185views more  JCB 2006»
13 years 9 months ago
A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks
Biological systems are traditionally studied by focusing on a specific subsystem, building an intuitive model for it, and refining the model using results from carefully designed ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...
JOT
2006
78views more  JOT 2006»
13 years 9 months ago
The JBoss Integration Plug-in for IntelliJ IDEA, Part 3
This paper is the third in a series of papers that describe a new plug-in for enabling the integration of the IntelliJ IDEA IDE with the JBoss application server. The JBoss plug-i...
Douglas A. Lyon, Martin Fuhrer, Thomas Rowland