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» A Relational Genomics Search Engine
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LREC
2008
155views Education» more  LREC 2008»
13 years 9 months ago
L-ISA: Learning Domain Specific Isa-Relations from the Web
Automated extraction of ontological knowledge from text corpora is a relevant task in Natural Language Processing. In this paper, we focus on the problem of finding hypernyms for ...
Alessandra Potrich, Emanuele Pianta
VLDB
1999
ACM
118views Database» more  VLDB 1999»
13 years 12 months ago
Similarity Search in High Dimensions via Hashing
The nearest- or near-neighbor query problems arise in a large variety of database applications, usually in the context of similarity searching. Of late, there has been increasing ...
Aristides Gionis, Piotr Indyk, Rajeev Motwani
BMCBI
2006
102views more  BMCBI 2006»
13 years 7 months ago
MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria
Background: A key post genomics challenge is to identify how genes in an organism come together and perform physiological functions. An important first step in this direction is t...
Sarita Ranjan, Ranjit Kumar Gundu, Akash Ranjan
RECOMB
2004
Springer
14 years 8 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
BMCBI
2008
103views more  BMCBI 2008»
13 years 7 months ago
The VirusBanker database uses a Java program to allow flexible searching through Bunyaviridae sequences
Background: Viruses of the Bunyaviridae have segmented negative-stranded RNA genomes and several of them cause significant disease. Many partial sequences have been obtained from ...
Mathieu Fourment, Mark J. Gibbs