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BMCBI
2005
152views more  BMCBI 2005»
13 years 7 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
BMCBI
2002
126views more  BMCBI 2002»
13 years 7 months ago
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
Background: When analyzing protein sequences using sequence similarity searches, orthologous sequences (that diverged by speciation) are more reliable predictors of a new protein&...
Christian M. Zmasek, Sean R. Eddy
VISSOFT
2005
IEEE
14 years 1 months ago
Support for Static Concept Location with sv3D
The paper presents a new visualization approach to support static concept location in source code. The approach is realized through the combination of two existing tools: IRiSS, w...
Xinrong Xie, Denys Poshyvanyk, Andrian Marcus
SSR
2001
108views more  SSR 2001»
13 years 9 months ago
The use of mediation and ontology technologies for software component information retrieval
Component Based Development aims at constructing software through the inter-relationship between pre-existing components. However, these components should be bound to a specific a...
Regina M. M. Braga, Marta Mattoso, Cláudia ...
AAAI
2008
13 years 10 months ago
Predicting Appropriate Semantic Web Terms from Words
The Semantic Web language RDF was designed to unambiguously define and use ontologies to encode data and knowledge on the Web. Many people find it difficult, however, to write com...
Lushan Han, Tim Finin