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BMCBI
2008
139views more  BMCBI 2008»
13 years 7 months ago
Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repea
Background: Identification of approximate tandem repeats is an important task of broad significance and still remains a challenging problem of computational genomics. Often there ...
Vladimir Paar, Nenad Pavin, Ivan Basar, Marija Ros...
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
13 years 11 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
DAC
2004
ACM
14 years 8 months ago
A SAT-based algorithm for reparameterization in symbolic simulation
Parametric representations used for symbolic simulation of circuits usually use BDDs. After a few steps of symbolic simulation, state set representation is converted from one para...
Pankaj Chauhan, Edmund M. Clarke, Daniel Kroening
ANCS
2008
ACM
13 years 9 months ago
On design of bandwidth scheduling algorithms for multiple data transfers in dedicated networks
The significance of high-performance dedicated networks has been well recognized due to the rapidly increasing number of large-scale applications that require high-speed data tran...
Yunyue Lin, Qishi Wu
BMCBI
2008
122views more  BMCBI 2008»
13 years 7 months ago
Grammar-based distance in progressive multiple sequence alignment
Background: We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithm...
David J. Russell, Hasan H. Otu, Khalid Sayood