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RECOMB
2004
Springer
14 years 8 months ago
A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs
The prediction of translation initiation sites (TISs) in eukaryotic mRNAs has been a challenging problem in computational molecular biology. In this paper, we present a new algori...
Haifeng Li, Tao Jiang
ICASSP
2008
IEEE
14 years 2 months ago
Joint base-calling of two DNA sequences with factor graphs
—Automated estimation of DNA base-sequences is an important step in genomics and in many other emerging fields in biological and medical sciences. Current automated sequencers p...
Xiaomeng Shi, Desmond S. Lun, Jim Meldrim, Ralf K&...
BMEI
2008
IEEE
14 years 2 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
SIGCOMM
1994
ACM
13 years 11 months ago
An Algorithm for Lossless Smoothing of MPEG Video
Interframe compression techniques, such as those used in MPEG video, give rise to a coded bit stream where picture sizes di er by a factor of 10 or more. As a result, bu ering is ...
Simon S. Lam, Simon Chow, David K. Y. Yau
WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
14 years 2 months ago
A General Framework for Local Pairwise Alignment Statistics with Gaps
We present a novel dynamic programming framework that allows one to compute tight upper bounds for the p-values of gapped local alignments in pseudo–polynomial time. Our algorith...
Pasi Rastas