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CSB
2005
IEEE
117views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Protein Structure Prediction Using Physical-Based Global Optimization and Knowledge-Guided Fragment Packing
We describe a new method to predict the tertiary structure of new-fold proteins. Our two-phase approach combines the knowledge-based fragmentpacking with the minimization of a phy...
Jinhui Ding, Elizabeth Eskow, Nelson L. Max, Silvi...
DATE
2005
IEEE
122views Hardware» more  DATE 2005»
14 years 3 months ago
Resource Sharing and Pipelining in Coarse-Grained Reconfigurable Architecture for Domain-Specific Optimization
Coarse-grained reconfigurable architectures aim to achieve both goals of high performance and flexibility. However, existing reconfigurable array architectures require many resour...
Yoonjin Kim, Mary Kiemb, Chulsoo Park, Jinyong Jun...
ICALP
2003
Springer
14 years 2 months ago
Optimal Cache-Oblivious Implicit Dictionaries
We consider the issues of implicitness and cache-obliviousness in the classical dictionary problem for n distinct keys over an unbounded and ordered universe. One finding in this ...
Gianni Franceschini, Roberto Grossi
IPPS
2002
IEEE
14 years 2 months ago
A Prototypical Self-Optimizing Package for Parallel Implementation of Fast Signal Transforms
This paper presents a self-adapting parallel package for computing the Walsh-Hadamard transform (WHT), a prototypical fast signal transform, similar to the fast Fourier transform....
Kang Chen, Jeremy R. Johnson
HYBRID
1999
Springer
14 years 1 months ago
As Soon as Possible: Time Optimal Control for Timed Automata
In this work we tackle the following problem: given a timed automaton, and a target set F of configurations, restrict its transition relation in a systematic way so that from ever...
Eugene Asarin, Oded Maler