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» A Space and Time Efficient Algorithm for SimRank Computation
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FCT
2005
Springer
15 years 8 months ago
Fully Incremental LCS Computation
Sequence comparison is a fundamental task in pattern matching. Its applications include file comparison, spelling correction, information retrieval, and computing (dis)similaritie...
Yusuke Ishida, Shunsuke Inenaga, Ayumi Shinohara, ...
APBC
2004
108views Bioinformatics» more  APBC 2004»
15 years 4 months ago
Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences
In this study we have designed a novel algorithm for searching common segments in multiple DNA sequences. To improve efficiency in pattern searching, combination of hashing encodi...
Tun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu,...
CPM
2009
Springer
183views Combinatorics» more  CPM 2009»
15 years 22 days ago
Permuted Longest-Common-Prefix Array
The longest-common-prefix (LCP) array is an adjunct to the suffix array that allows many string processing problems to be solved in optimal time and space. Its construction is a bo...
Juha Kärkkäinen, Giovanni Manzini, Simon...
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IPPS
2002
IEEE
15 years 7 months ago
Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways
Systemic pathways-oriented approaches to analysis of metabolic networks are effective for small networks but are computationally infeasible for genome scale networks. Current comp...
Nagiza F. Samatova, Al Geist, George Ostrouchov, A...
ICIP
2010
IEEE
15 years 26 days ago
Image analysis with regularized Laplacian eigenmaps
Many classes of image data span a low dimensional nonlinear space embedded in the natural high dimensional image space. We adopt and generalize a recently proposed dimensionality ...
Frank Tompkins, Patrick J. Wolfe