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    BMCBI
    2007
    247views more  BMCBI 2007»
    A survey of DNA motif finding algorithms
    13 years 6 months ago
    A survey of DNA motif finding algorithms
    Download  www.biomedcentral.com
    Background: Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especi...
    Modan K. Das, Ho-Kwok Dai
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    BMCBI
    2011
    254views Artificial Intelligence» more  BMCBI 2011»
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    12 years 10 months ago
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
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    Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
    Yao Fu, Laura R. Jarboe, Julie A. Dickerson
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    TCS
    2008
    149views Theoretical Computer Science» more  TCS 2008»
    Detection of subtle variations as consensus motifs
    13 years 6 months ago
    Detection of subtle variations as consensus motifs
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    We address the problem of detecting consensus motifs, that occur with subtle variations, across multiple sequences. These are usually functional domains in DNA sequences such as t...
    Matteo Comin, Laxmi Parida
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    BMCBI
    2008
    126views more  BMCBI 2008»
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    13 years 6 months ago
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    Download  www.biomedcentral.com
    Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
    Katerina Kechris, Hao Li
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    RECOMB
    2001
    Springer
    164views Computational Biology» more  RECOMB 2001»
    Context-specific Bayesian clustering for gene expression data
    14 years 7 months ago
    Context-specific Bayesian clustering for gene expression data
    Download  biocomp.bioen.uiuc.edu
    The recent growth in genomic data and measurements of genome-wide expression patterns allows us to apply computational tools to examine gene regulation by transcription factors. I...
    Yoseph Barash, Nir Friedman
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