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    » A Statistical Method for Finding Transcription Factor Bindin...
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    BMCBI
    2007
    133views more  BMCBI 2007»
    MATLIGN: a motif clustering, comparison and matching tool
    13 years 6 months ago
    MATLIGN: a motif clustering, comparison and matching tool
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    Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
    Matti Kankainen, Ari Löytynoja
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    BMCBI
    2005
    147views more  BMCBI 2005»
    GATA: a graphic alignment tool for comparative sequence analysis
    13 years 6 months ago
    GATA: a graphic alignment tool for comparative sequence analysis
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    Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
    David A. Nix, Michael B. Eisen
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    ALMOB
    2008
    127views more  ALMOB 2008»
    HuMiTar: A sequence-based method for prediction of human microRNA targets
    13 years 6 months ago
    HuMiTar: A sequence-based method for prediction of human microRNA targets
    Download  www.almob.org
    Background: MicroRNAs (miRs) are small noncoding RNAs that bind to complementary/partially complementary sites in the 3' untranslated regions of target genes to regulate prot...
    Jishou Ruan, Hanzhe Chen, Lukasz A. Kurgan, Ke Che...
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    BMCBI
    2007
    186views more  BMCBI 2007»
    Modeling human cancer-related regulatory modules by GA-RNN hybrid algorithms
    13 years 6 months ago
    Modeling human cancer-related regulatory modules by GA-RNN hybrid algorithms
    Download  www.biomedcentral.com
    Background: Modeling cancer-related regulatory modules from gene expression profiling of cancer tissues is expected to contribute to our understanding of cancer biology as well as...
    Jung-Hsien Chiang, Shih-Yi Chao
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    NAR
    2007
    135views more  NAR 2007»
    g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments
    13 years 6 months ago
    g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments
    Download  emu.at.mt.ut.ee
    g:Profiler (http://biit.cs.ut.ee/gprofiler/) is a public web server for characterising and manipulating gene lists resulting from mining high-throughput genomic data. g:Profiler h...
    Jüri Reimand, Meelis Kull, Hedi Peterson, Jaa...
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