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    » A benchmark for Affymetrix GeneChip expression measures
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    BMCBI
    2007
    160views more  BMCBI 2007»
    Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips
    13 years 7 months ago
    Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips
    Download  www.biomedcentral.com
    Background: Affymetrix GeneChips are a popular platform for performing whole-genome experiments on the transcriptome. There are a range of different calibration steps, and users a...
    Andrew P. Harrison, Caroline E. Johnston, Christin...
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    TCBB
    2010
    96views more  TCBB 2010»
    A Survey of Spatial Defects in Homo Sapiens Affymetrix GeneChips
    13 years 2 months ago
    A Survey of Spatial Defects in Homo Sapiens Affymetrix GeneChips
    Download  bioinformatics.essex.ac.uk
    Modern biology has moved from a science of individual measurements to a science where data are collected on an industrial scale. Foremost, among the new tools for biochemistry are ...
    William B. Langdon, Graham J. G. Upton, Renata da ...
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    BMCBI
    2007
    110views more  BMCBI 2007»
    Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
    13 years 7 months ago
    Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
    Download  www.biomedcentral.com
    Background: Affymetrix GeneChip technology enables the parallel observations of tens of thousands of genes. It is important that the probe set annotations are reliable so that bio...
    Maria A. Stalteri, Andrew P. Harrison
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    BMCBI
    2006
    93views more  BMCBI 2006»
    A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
    13 years 7 months ago
    A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
    Download  www.biomedcentral.com
    Background: Many of the most popular pre-processing methods for Affymetrix expression arrays, such as RMA, gcRMA, and PLIER, simultaneously analyze data across a set of predetermi...
    Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Trip...
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    ACMSE
    2006
    ACM
    175views Theoretical Computer Science» more  ACMSE 2006»
    Automatic quality assessment of Affymetrix GeneChip data
    14 years 1 months ago
    Automatic quality assessment of Affymetrix GeneChip data
    Download  statgen.ncsu.edu
    Computing reliable gene expression levels from microarray experiments is a sophisticated process with many potential pitfalls. Quality control is one of the most important steps i...
    Steffen Heber, Beate Sick
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