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» A branch-and-cut algorithm for multiple sequence alignment
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COMPLIFE
2005
Springer
14 years 1 months ago
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
Markus Bauer, Gunnar W. Klau, Knut Reinert
ICASSP
2011
IEEE
12 years 11 months ago
Iterative estimation of structures of multiple RNA homologs: Turbofold
TurboFold, an iterative algorithm for estimating the common secondary structures of multiple RNA homologs, is presented. The algorithm is motivated by and has structure and attrib...
Gaurav Sharma, Arif Ozgun Harmanci, David H. Mathe...
ICASSP
2010
IEEE
13 years 8 months ago
Partial sequence matching using an Unbounded Dynamic Time Warping algorithm
Before the advent of Hidden Markov Models(HMM)-based speech recognition, many speech applications were built using pattern matching algorithms like the Dynamic Time Warping (DTW) ...
Xavier Anguera, Robert Macrae, Nuria Oliver
ECCV
2006
Springer
13 years 11 months ago
Wavelet-Based Super-Resolution Reconstruction: Theory and Algorithm
We present an analysis and algorithm for the problem of super-resolution imaging, that is the reconstruction of HR (high-resolution) images from a sequence of LR (lowresolution) im...
Hui Ji, Cornelia Fermüller
RECOMB
2004
Springer
14 years 8 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler