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» A cluster validity framework for genome expression data
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139
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KDD
2006
ACM
173views Data Mining» more  KDD 2006»
16 years 4 months ago
Robust information-theoretic clustering
How do we find a natural clustering of a real world point set, which contains an unknown number of clusters with different shapes, and which may be contaminated by noise? Most clu...
Christian Böhm, Christos Faloutsos, Claudia P...
PR
2006
116views more  PR 2006»
15 years 3 months ago
Shared farthest neighbor approach to clustering of high dimensionality, low cardinality data
Clustering algorithms are routinely used in biomedical disciplines, and are a basic tool in bioinformatics. Depending on the task at hand, there are two most popular options, the ...
Stefano Rovetta, Francesco Masulli
145
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BMCBI
2007
156views more  BMCBI 2007»
15 years 3 months ago
Bio: : NEXUS: a Perl API for the NEXUS format for comparative biological data
Background: Evolutionary analysis provides a formal framework for comparative analysis of genomic and other data. In evolutionary analysis, observed data are treated as the termin...
Thomas Hladish, Vivek Gopalan, Chengzhi Liang, Wei...
136
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BICOB
2009
Springer
15 years 10 months ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...
132
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BMCBI
2008
117views more  BMCBI 2008»
15 years 3 months ago
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
Background: The functional characterization of newly discovered proteins has been a challenge in the post-genomic era. Protein-protein interactions provide insights into the funct...
Young-Rae Cho, Lei Shi, Murali Ramanathan, Aidong ...