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» A cluster validity framework for genome expression data
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BMCBI
2010
134views more  BMCBI 2010»
13 years 7 months ago
ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data
Background: Many high-throughput genomic experiments, such as Synthetic Genetic Array and yeast two-hybrid, use colony growth on solid media as a screen metric. These experiments ...
John C. Dittmar, Robert J. D. Reid, Rodney Rothste...
CVPR
2012
IEEE
11 years 9 months ago
Group action induced distances for averaging and clustering Linear Dynamical Systems with applications to the analysis of dynami
We introduce a framework for defining a distance on the (non-Euclidean) space of Linear Dynamical Systems (LDSs). The proposed distance is induced by the action of the group of o...
Bijan Afsari, Rizwan Chaudhry, Avinash Ravichandra...
SDM
2009
SIAM
193views Data Mining» more  SDM 2009»
14 years 4 months ago
Agglomerative Mean-Shift Clustering via Query Set Compression.
Mean-Shift (MS) is a powerful non-parametric clustering method. Although good accuracy can be achieved, its computational cost is particularly expensive even on moderate data sets...
Xiaotong Yuan, Bao-Gang Hu, Ran He
BMCBI
2010
171views more  BMCBI 2010»
13 years 7 months ago
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Background: Cluster analysis is an important technique for the exploratory analysis of biological data. Such data is often high-dimensional, inherently noisy and contains outliers...
Benjamin Georgi, Ivan Gesteira Costa, Alexander Sc...
BMCBI
2007
123views more  BMCBI 2007»
13 years 7 months ago
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data
Background: In order to recapitulate tumor progression pathways using epigenetic data, we developed novel clustering and pathway reconstruction algorithms, collectively referred t...
Zailong Wang, Pearlly Yan, Dustin P. Potter, Chari...