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    » A comparison of Affymetrix gene expression arrays
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    BMCBI
    2006
    93views more  BMCBI 2006»
    A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
    13 years 8 months ago
    A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
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    Background: Many of the most popular pre-processing methods for Affymetrix expression arrays, such as RMA, gcRMA, and PLIER, simultaneously analyze data across a set of predetermi...
    Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Trip...
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    BIBE
    2007
    IEEE
    191views Bioinformatics» more  BIBE 2007»
    PANP - a New Method of Gene Detection on Oligonucleotide Expression Arrays
    14 years 2 months ago
    PANP - a New Method of Gene Detection on Oligonucleotide Expression Arrays
    Download  people.brandeis.edu
    Abstract. Currently, the method most used for gene detection calls on Affymetrix oligonucleotide arrays is provided as part of the MAS5.0 software. The MAS method uses Wilcoxon sta...
    Peter Warren, Deanne Taylor, Paolo G. V. Martini, ...
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    BMCBI
    2007
    120views more  BMCBI 2007»
    Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays
    13 years 8 months ago
    Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays
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    Background: Extracting biological information from high-density Affymetrix arrays is a multi-step process that begins with the accurate annotation of microarray probes. Shortfalls...
    Jun Lu, Joseph C. Lee, Marc L. Salit, Margaret C. ...
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    BMCBI
    2006
    123views more  BMCBI 2006»
    How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different result
    13 years 8 months ago
    How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different result
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    Background: Short oligonucleotide arrays for transcript profiling have been available for several years. Generally, raw data from these arrays are analysed with the aid of the Mic...
    Frank F. Millenaar, John Okyere, Sean T. May, Mart...
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    BMCBI
    2007
    186views more  BMCBI 2007»
    GeneBins: a database for classifying gene expression data, with application to plant genome arrays
    13 years 8 months ago
    GeneBins: a database for classifying gene expression data, with application to plant genome arrays
    Download  www.biomedcentral.com
    Background: To interpret microarray experiments, several ontological analysis tools have been developed. However, current tools are limited to specific organisms. Results: We deve...
    Nicolas Goffard, Georg Weiller
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