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» A complex biological database querying method
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JCB
2008
159views more  JCB 2008»
13 years 7 months ago
BayesMD: Flexible Biological Modeling for Motif Discovery
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
Man-Hung Eric Tang, Anders Krogh, Ole Winther
DASFAA
2005
IEEE
136views Database» more  DASFAA 2005»
14 years 1 months ago
Indexing DNA Sequences Using q-Grams
We have observed in recent years a growing interest in similarity search on large collections of biological sequences. Contributing to the interest, this paper presents a method fo...
Xia Cao, Shuai Cheng Li, Anthony K. H. Tung
WWW
2010
ACM
14 years 2 months ago
Matrix "Bit" loaded: a scalable lightweight join query processor for RDF data
The Semantic Web community, until now, has used traditional database systems for the storage and querying of RDF data. The SPARQL query language also closely follows SQL syntax. A...
Medha Atre, Vineet Chaoji, Mohammed J. Zaki, James...
EDBT
2011
ACM
225views Database» more  EDBT 2011»
12 years 11 months ago
On (not) indexing quadratic form distance by metric access methods
The quadratic form distance (QFD) has been utilized as an effective similarity function in multimedia retrieval, in particular, when a histogram representation of objects is used...
Tomás Skopal, Tomás Bartos, Jakub Lo...
CIKM
2000
Springer
13 years 12 months ago
Object and Query Transformation: Supporting Multi-Dimensional Queries through Code Reuse
The complexity of deploying high-performance spatial structures in transactional DBMS environments has motivated researchers to experiment with the idea of reusing the effort inve...
Ratko Orlandic, Byunggu Yu