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13 years 9 months ago
Prediction of the Number of Residue Contacts in Proteins
Knowing the number of residue contacts in a protein is crucial for deriving constraints useful in modeling protein folding, protein structure, and/or scoring remote homology searc...
Piero Fariselli, Rita Casadio
BMCBI
2008
211views more  BMCBI 2008»
13 years 7 months ago
CPSP-tools - Exact and complete algorithms for high-throughput 3D lattice protein studies
Background: The principles of protein folding and evolution pose problems of very high inherent complexity. Often these problems are tackled using simplified protein models, e.g. ...
Martin Mann, Sebastian Will, Rolf Backofen
ICIP
2009
IEEE
13 years 5 months ago
Light Speed Labeling for RISC architectures
This article introduces a fast algorithm for Connected Component Labeling of binary images called Light Speed Labeling. It is segment-based and a line-relative labeling that was e...
Lionel Lacassagne, Bertrand Zavidovique
BMCBI
2010
175views more  BMCBI 2010»
13 years 7 months ago
Calibur: a tool for clustering large numbers of protein decoys
Background: Ab initio protein structure prediction methods generate numerous structural candidates, which are referred to as decoys. The decoy with the most number of neighbors of...
Shuai Cheng Li, Yen Kaow Ng
PAKDD
2009
ACM
233views Data Mining» more  PAKDD 2009»
14 years 5 days ago
A Kernel Framework for Protein Residue Annotation
Abstract. Over the last decade several prediction methods have been developed for determining structural and functional properties of individual protein residues using sequence and...
Huzefa Rangwala, Christopher Kauffman, George Kary...