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BMCBI
2008
211views more  BMCBI 2008»
13 years 8 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
BMCBI
2006
145views more  BMCBI 2006»
13 years 8 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
BMCBI
2007
123views more  BMCBI 2007»
13 years 8 months ago
BIRCH: A user-oriented, locally-customizable, bioinformatics system
Background: Molecular biologists need sophisticated analytical tools which often demand extensive computational resources. While finding, installing, and using these tools can be ...
Brian Fristensky
BMCBI
2007
142views more  BMCBI 2007»
13 years 8 months ago
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
nd: A key abstraction in representing proteomics knowledge is the notion of unique identifiers for individual entities (e.g. proteins) and the massive graph of relationships among...
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Mar...
PR
2008
117views more  PR 2008»
13 years 8 months ago
A scale-free distribution of false positives for a large class of audio similarity measures
The "bag-of-frames" approach (BOF) to audio pattern recognition models signals as the long-term statistical distribution of their local spectral features, a prototypical...
Jean-Julien Aucouturier, François Pachet