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    BMCBI
    2007
    136views more  BMCBI 2007»
    Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
    13 years 7 months ago
    Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
    Download  www.biomedcentral.com
    Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
    Xiaoyu Chen, Mathieu Blanchette
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    JMLR
    2012
    195views Programming Languages» more  JMLR 2012»
    Bayesian regularization of non-homogeneous dynamic Bayesian networks by globally coupling interaction parameters
    11 years 10 months ago
    Bayesian regularization of non-homogeneous dynamic Bayesian networks by globally coupling interaction parameters
    Download  jmlr.csail.mit.edu
    To relax the homogeneity assumption of classical dynamic Bayesian networks (DBNs), various recent studies have combined DBNs with multiple changepoint processes. The underlying as...
    Marco Grzegorczyk, Dirk Husmeier
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    BIBM
    2009
    IEEE
    172views Bioinformatics» more  BIBM 2009»
    Identifying Gene Signatures from Cancer Progression Data Using Ordinal Analysis
    14 years 24 days ago
    Identifying Gene Signatures from Cancer Progression Data Using Ordinal Analysis
    Download  vorlon.case.edu
    —A comprehensive understanding of cancer progression may shed light on genetic and molecular mechanisms of oncogenesis, and it may provide much needed information for effective d...
    Yoon Soo Pyon, Jing Li
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    TCBB
    2011
    182views Software Engineering» more  TCBB 2011»
    Learning Genetic Regulatory Network Connectivity from Time Series Data
    13 years 2 months ago
    Learning Genetic Regulatory Network Connectivity from Time Series Data
    Download  www.async.ece.utah.edu
    Recent experimental advances facilitate the collection of time series data that indicate which genes in a cell are expressed. This paper proposes an efficient method to generate th...
    Nathan A. Barker, Chris J. Myers, Hiroyuki Kuwahar...
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    PADS
    2009
    ACM
    115views Modeling and Simulation» more  PADS 2009»
    Scalable Time Warp on Blue Gene Supercomputers
    14 years 2 months ago
    Scalable Time Warp on Blue Gene Supercomputers
    Download  www.cs.rpi.edu
    Abstract—In this paper we illustrate scalable parallel performance for the Time Warp synchronization protocol on the L and P variants of the IBM Blue Gene supercomputer. Scalable...
    David W. Bauer, Christopher D. Carothers, Akintayo...
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