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» A fast indexing approach for protein structure comparison
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BMCBI
2007
143views more  BMCBI 2007»
13 years 7 months ago
RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules
Background: In recent years, RNA molecules that are not translated into proteins (ncRNAs) have drawn a great deal of attention, as they were shown to be involved in many cellular ...
Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron...
HIPC
2009
Springer
13 years 5 months ago
Highly scalable algorithm for distributed real-time text indexing
Stream computing research is moving from terascale to petascale levels. It aims to rapidly analyze data as it streams in from many sources and make decisions with high speed and a...
Ankur Narang, Vikas Agarwal, Monu Kedia, Vijay K. ...
ISBRA
2007
Springer
14 years 1 months ago
Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice
Abstract. The lattice approach to biological structural analysis was made popular by the HP model for protein folding, but had not been used previously for RNA secondary structure ...
Minghui Jiang, Martin Mayne, Joel Gillespie
COMPLIFE
2005
Springer
14 years 1 months ago
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
Markus Bauer, Gunnar W. Klau, Knut Reinert
SIAMSC
2011
126views more  SIAMSC 2011»
13 years 2 months ago
Fast Structured AMG Preconditioning for the Bidomain Model in Electrocardiology
The electrical activity of the heart may be modeled by a non-linear system of partial differential equations known as the bidomain model. Due to the rapid variations in the electr...
Micol Pennacchio, Valeria Simoncini