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BMEI
2008
IEEE
14 years 1 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
BMCBI
2005
138views more  BMCBI 2005»
13 years 7 months ago
Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
Background: The chemical property and biological function of a protein is a direct consequence of its primary structure. Several algorithms have been developed which determine ali...
Kshitiz Gupta, Dina Thomas, S. V. Vidya, K. V. Ven...
TOG
2008
95views more  TOG 2008»
13 years 7 months ago
Spectral quadrangulation with orientation and alignment control
This paper presents a new quadrangulation algorithm, extending the spectral surface quadrangulation approach where the coarse quadrangular structure is derived from the Morse-Smal...
Jin Huang, Muyang Zhang, Jin Ma, Xinguo Liu, Leif ...
ISMDA
2005
Springer
14 years 29 days ago
Extracting Molecular Diversity Between Populations Through Sequence Alignments
The use of sequence alignments for establishing protein homology relationships has an extensive tradition in the field of bioinformatics, and there is an increasing desire for more...
Steinar Thorvaldsen, Tor Flå, Nils Willassen
IMAMS
2007
133views Mathematics» more  IMAMS 2007»
13 years 9 months ago
Tuning Subdivision Algorithms Using Constrained Energy Optimization
In this paper a method is presented to fair the limit surface of a subdivision algorithm around an extraordinary point. The eigenvalues and eigenvectors of the subdivision matrix d...
Ingo Ginkel, Georg Umlauf