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ICCAD
2002
IEEE
104views Hardware» more  ICCAD 2002»
14 years 6 months ago
A new enhanced SPFD rewiring algorithm
This paper presents an in-depth study of the theory and algorithms for the SPFD-based (Set of Pairs of Functions to be Distinguished) rewiring, and explores the flexibility in the...
Jason Cong, Joey Y. Lin, Wangning Long
FPL
2008
Springer
150views Hardware» more  FPL 2008»
13 years 10 months ago
Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs
Wavefront algorithms, such as the Smith-Waterman algorithm, are commonly used in bioinformatics for exact local and global sequence alignment. These algorithms are highly computat...
Betul Buyukkurt, Walid A. Najjar
CEC
2007
IEEE
14 years 3 months ago
Memetic algorithms for inexact graph matching
—The noise-robust matching of two graphs is a hard combinatorial problem with practical importance in several domains. In practical applications, a unique solution for a given in...
Thomas Bärecke, Marcin Detyniecki
BMCBI
2005
119views more  BMCBI 2005»
13 years 9 months ago
GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures
Background: We introduce GASH, a new, publicly accessible program for structural alignment and superposition. Alignments are scored by the Number of Equivalent Residues (NER), a q...
Daron M. Standley, Hiroyuki Toh, Haruki Nakamura
NIPS
2003
13 years 10 months ago
AUC Optimization vs. Error Rate Minimization
The area under an ROC curve (AUC) is a criterion used in many applications to measure the quality of a classification algorithm. However, the objective function optimized in most...
Corinna Cortes, Mehryar Mohri