This paper presents an in-depth study of the theory and algorithms for the SPFD-based (Set of Pairs of Functions to be Distinguished) rewiring, and explores the flexibility in the...
Wavefront algorithms, such as the Smith-Waterman algorithm, are commonly used in bioinformatics for exact local and global sequence alignment. These algorithms are highly computat...
—The noise-robust matching of two graphs is a hard combinatorial problem with practical importance in several domains. In practical applications, a unique solution for a given in...
Background: We introduce GASH, a new, publicly accessible program for structural alignment and superposition. Alignments are scored by the Number of Equivalent Residues (NER), a q...
The area under an ROC curve (AUC) is a criterion used in many applications to measure the quality of a classification algorithm. However, the objective function optimized in most...