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» A graph-theoretic data model for genome mapping databases
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BMCBI
2005
169views more  BMCBI 2005»
13 years 7 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
BMCBI
2007
115views more  BMCBI 2007»
13 years 7 months ago
SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis
Background: There are many fewer genes in the human genome than there are expressed transcripts. Alternative splicing is the reason. Alternatively spliced transcripts are often sp...
Ari B. Kahn, Michael C. Ryan, Hongfang Liu, Barry ...
WWW
2005
ACM
14 years 8 months ago
Constructing extensible XQuery mappings
Constructing and maintaining semantic mappings are necessary but troublesome in data sharing systems. While most current work focuses on seeking automated techniques to solve this...
Gang Qian, Yisheng Dong
KDD
2000
ACM
147views Data Mining» more  KDD 2000»
13 years 11 months ago
A self organizing map (SOM) extended model for information discovery in a digital library context
This paper presents the MicroNOMAD Discovering Tool. Its main characteristic is both to provide an user with emergent analyses of a multimedia database content and with querying a...
Jean-Charles Lamirel, Jacques Ducloy, Hager Kammou...
BMCBI
2010
118views more  BMCBI 2010»
13 years 7 months ago
Predicting nucleosome positioning using a duration Hidden Markov Model
Background: The nucleosome is the fundamental packing unit of DNAs in eukaryotic cells. Its detailed positioning on the genome is closely related to chromosome functions. Increasi...
Liqun Xi, Yvonne Fondufe-Mittendorf, Lei Xia, Jare...