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» A graphical model for protein secondary structure prediction
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ISSPIT
2010
13 years 2 months ago
Accelerating the Nussinov RNA folding algorithm with CUDA/GPU
Graphics processing units (GPU) on commodity video cards have evolved into powerful computational devices. The RNA secondary structure arises from the primary structure and a backb...
Dar-Jen Chang, Christopher Kimmer, Ming Ouyang
BMCBI
2006
137views more  BMCBI 2006»
13 years 8 months ago
INTEGRATOR: interactive graphical search of large protein interactomes over the Web
Background: The rapid growth of protein interactome data has elevated the necessity and importance of network analysis tools. However, unlike pure text data, network search spaces...
Aaron N. Chang, Jason McDermott, Zachary Frazier, ...
RECOMB
2008
Springer
14 years 8 months ago
Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information
High-accuracy protein structure modeling demands accurate and very fast side chain prediction since such a procedure must be repeatedly called at each step of structure refinement....
Jing Zhang, Xin Gao, Jinbo Xu, Ming Li
GECCO
2008
Springer
164views Optimization» more  GECCO 2008»
13 years 9 months ago
Genetic algorithms with local search optimization for protein structure prediction problem
This paper presents a new Genetic Algorithm for Protein Structure Prediction problem in both 2D and 3D hydrophobichydrophilic lattice models, introduced in [1]. Our algorithm evol...
Igor Berenboym, Mireille Avigal
IJON
2010
199views more  IJON 2010»
13 years 5 months ago
DFS-generated pathways in GA crossover for protein structure prediction
Genetic Algorithms (GAs), as nondeterministic conformational search techniques, are promising for solving protein structure prediction (PSP) problems. The crossover operator of a ...
Tamjidul Hoque, Madhu Chetty, Andrew Lewis, Abdul ...