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» A heuristic managing errors for DNA sequencing
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GCB
2000
Springer
137views Biometrics» more  GCB 2000»
13 years 11 months ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright
CIKM
2008
Springer
13 years 9 months ago
Pairwise statistical significance of local sequence alignment using multiple parameter sets
Background: Accurate estimation of statistical significance of a pairwise alignment is an important problem in sequence comparison. Recently, a comparative study of pairwise stati...
Ankit Agrawal, Xiaoqiu Huang
BMCBI
2007
166views more  BMCBI 2007»
13 years 7 months ago
Data handling strategies for high throughput pyrosequencers
Background: New high throughput pyrosequencers such as the 454 Life Sciences GS 20 are capable of massively parallelizing DNA sequencing providing an unprecedented rate of output ...
Gabriele A. Trombetti, Raoul J. P. Bonnal, Ermanno...
CIKM
2009
Springer
14 years 2 months ago
Fast and effective histogram construction
Histogram construction or sequence segmentation is a basic task with applications in database systems, information retrieval, and knowledge management. Its aim is to approximate a...
Felix Halim, Panagiotis Karras, Roland H. C. Yap
AAAI
2010
13 years 9 months ago
Local Search in Histogram Construction
The problem of dividing a sequence of values into segments occurs in database systems, information retrieval, and knowledge management. The challenge is to select a finite number ...
Felix Halim, Panagiotis Karras, Roland H. C. Yap