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BMCBI
2005
109views more  BMCBI 2005»
13 years 9 months ago
Genome comparison without alignment using shortest unique substrings
Background: Sequence comparison by alignment is a fundamental tool of molecular biology. In this paper we show how a number of sequence comparison tasks, including the detection o...
Bernhard Haubold, Nora Pierstorff, Friedrich M&oum...
SIGMOD
2005
ACM
194views Database» more  SIGMOD 2005»
14 years 2 months ago
STRG-Index: Spatio-Temporal Region Graph Indexing for Large Video Databases
In this paper, we propose new graph-based data structure and indexing to organize and retrieve video data. Several researches have shown that a graph can be a better candidate for...
JeongKyu Lee, Jung-Hwan Oh, Sae Hwang
BMCBI
2010
182views more  BMCBI 2010»
13 years 9 months ago
L2-norm multiple kernel learning and its application to biomedical data fusion
Background: This paper introduces the notion of optimizing different norms in the dual problem of support vector machines with multiple kernels. The selection of norms yields diff...
Shi Yu, Tillmann Falck, Anneleen Daemen, Lé...
RECOMB
2008
Springer
14 years 9 months ago
Constructing Treatment Portfolios Using Affinity Propagation
A key problem of interest to biologists and medical researchers is the selection of a subset of queries or treatments that provide maximum utility for a population of targets. For ...
Delbert Dueck, Brendan J. Frey, Nebojsa Jojic, Vla...
RECOMB
2002
Springer
14 years 9 months ago
Phase-independent rhythmic analysis of genome-wide expression patterns
We introduce a model-based analysis technique for extracting and characterizing rhythmic expression pro les from genome-wide DNA microarray hybridization data. These patterns are ...
Christopher James Langmead, Anthony K. Yan, C. Rob...