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BMCBI
2006
192views more  BMCBI 2006»
13 years 7 months ago
Analysis of circular genome rearrangement by fusions, fissions and block-interchanges
Background: Analysis of genomes evolving via block-interchange events leads to a combinatorial problem of sorting by block-interchanges, which has been studied recently to evaluat...
Chin Lung Lu, Yen-Lin Huang, Tsui Ching Wang, Hsie...
RECOMB
2009
Springer
14 years 2 months ago
Counting All DCJ Sorting Scenarios
In genome rearrangements, the double cut and join (DCJ) operation, introduced by Yancopoulos et al., allows to represent most rearrangement events that could happen in multichromos...
Marília D. V. Braga, Jens Stoye
WABI
2001
Springer
138views Bioinformatics» more  WABI 2001»
13 years 12 months ago
Algorithms for Finding Gene Clusters
Abstract. Comparing gene orders in completely sequenced genomes is a standard approach to locate clusters of functionally associated genes. Often, gene orders are modeled as permut...
Steffen Heber, Jens Stoye
SIAMDM
2010
194views more  SIAMDM 2010»
13 years 2 months ago
Combinatorics and Geometry of Finite and Infinite Squaregraphs
Abstract. Squaregraphs were originally defined as finite plane graphs in which all inner faces are quadrilaterals (i.e., 4-cycles) and all inner vertices (i.e., the vertices not in...
Hans-Jürgen Bandelt, Victor Chepoi, David Epp...