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» A new approach to fragment assembly in DNA sequencing
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FPL
1997
Springer
78views Hardware» more  FPL 1997»
13 years 11 months ago
Run-time compaction of FPGA designs
Controllers for dynamically recon gurable FPGAs that are capable of supporting multiple independent tasks simultaneously need to be able to place designs at run{time when the seque...
Oliver Diessel, Hossam A. ElGindy
BMCBI
2008
98views more  BMCBI 2008»
13 years 6 months ago
MTAP: The Motif Tool Assessment Platform
Background: In recent years, substantial effort has been applied to de novo regulatory motif discovery. At this time, more than 150 software tools exist to detect regulatory bindi...
Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah...
BMCBI
2004
166views more  BMCBI 2004»
13 years 6 months ago
Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models
Background: Many current gene prediction methods use only one model to represent proteincoding regions in a genome, and so are less likely to predict the location of genes that ha...
Shaun Mahony, James O. McInerney, Terry J. Smith, ...
BMCBI
2007
167views more  BMCBI 2007»
13 years 6 months ago
Applying negative rule mining to improve genome annotation
Background: Unsupervised annotation of proteins by software pipelines suffers from very high error rates. Spurious functional assignments are usually caused by unwarranted homolog...
Irena I. Artamonova, Goar Frishman, Dmitrij Frishm...
BMCBI
2005
132views more  BMCBI 2005»
13 years 6 months ago
CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
Background: Protein-protein, protein-DNA and protein-RNA interactions are of central importance in biological systems. Quadrapole Time-of-flight (Q-TOF) mass spectrometry is a sen...
Yong Tang, Yingfeng Chen, Cheryl F. Lichti, Roger ...