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JCB
2007
94views more  JCB 2007»
13 years 7 months ago
Locality and Gaps in RNA Comparison
Locality is an important and well-studied notion in comparative analysis of biological sequences. Similarly, taking into account affine gap penalties when calculating biological ...
Rolf Backofen, Shihyen Chen, Danny Hermelin, Gad M...
AAAI
2012
11 years 10 months ago
Online Sequence Alignment for Real-Time Audio Transcription by Non-Experts
Real-time transcription provides deaf and hard of hearing people visual access to spoken content, such as classroom instruction, and other live events. Currently, the only reliabl...
Walter S. Lasecki, Christopher D. Miller, Donato B...
ICNSC
2008
IEEE
14 years 1 months ago
Multiple Sequence Alignment Based on Genetic Algorithms with Reserve Selection
— This paper presents an approach to the multiple sequence alignment (MSA) problem by applying genetic algorithms with a reserve selection mechanism. MSA is one of the most funda...
Yang Chen, Jinglu Hu, Kotaro Hirasawa, Songnian Yu
JPDC
2006
112views more  JPDC 2006»
13 years 7 months ago
Large scale multiple sequence alignment with simultaneous phylogeny inference
Multiple sequence alignment (MSA) and phylogenetic tree reconstruction are one of the most important problems in the computational biology. While both these problems are of great ...
Gilles Parmentier, Denis Trystram, Jaroslaw Zola
IJBRA
2006
111views more  IJBRA 2006»
13 years 7 months ago
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
: Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...