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» A numerical method for mass spectral data analysis
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PKDD
2009
Springer
118views Data Mining» more  PKDD 2009»
14 years 2 months ago
Protein Identification from Tandem Mass Spectra with Probabilistic Language Modeling
This paper presents an interdisciplinary investigation of statistical information retrieval (IR) techniques for protein identification from tandem mass spectra, a challenging probl...
Yiming Yang, Abhay Harpale, Subramaniam Ganapathy
COLT
2004
Springer
14 years 28 days ago
A Statistical Mechanics Analysis of Gram Matrix Eigenvalue Spectra
Abstract. The Gram matrix plays a central role in many kernel methods. Knowledge about the distribution of eigenvalues of the Gram matrix is useful for developing appropriate model...
David C. Hoyle, Magnus Rattray
BMCBI
2007
106views more  BMCBI 2007»
13 years 7 months ago
Constructing a meaningful evolutionary average at the phylogenetic center of mass
Background: As a consequence of the evolutionary process, data collected from related species tend to be similar. This similarity by descent can obscure subtler signals in the dat...
Eric A. Stone, Arend Sidow
BMCBI
2010
145views more  BMCBI 2010»
13 years 7 months ago
WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomi
Background: Quantitative proteomics technologies have been developed to comprehensively identify and quantify proteins in two or more complex samples. Quantitative proteomics base...
Fan Mo, Qun Mo, Yuanyuan Chen, David R. Goodlett, ...
BMCBI
2005
118views more  BMCBI 2005»
13 years 7 months ago
Feature selection and nearest centroid classification for protein mass spectrometry
Background: The use of mass spectrometry as a proteomics tool is poised to revolutionize early disease diagnosis and biomarker identification. Unfortunately, before standard super...
Ilya Levner