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» A polyhedral approach to RNA sequence structure alignment
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BIOCOMP
2006
13 years 10 months ago
TALI: Protein Structure Alignment Using Backbone Torsion Angles
- This article introduces a novel protein structure alignment method (named TALI) based on protein backbone torsion angle instead of the more traditional distance matrix. Represent...
Xijiang Miao, Michael Bryson, Homayoun Valafar
RECOMB
2009
Springer
14 years 9 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...
GCB
2001
Springer
111views Biometrics» more  GCB 2001»
14 years 1 months ago
Approximate Bayesian Discrimination between Alternative DNA Mosaic Structures
: We derive an approximate Bayesian hypothesis test to discriminate between alternative mosaic structures of DNA sequence alignments, and test the viability of this approach on a s...
Dirk Husmeier, Frank Wright
JPDC
2006
112views more  JPDC 2006»
13 years 8 months ago
Large scale multiple sequence alignment with simultaneous phylogeny inference
Multiple sequence alignment (MSA) and phylogenetic tree reconstruction are one of the most important problems in the computational biology. While both these problems are of great ...
Gilles Parmentier, Denis Trystram, Jaroslaw Zola
CSB
2003
IEEE
110views Bioinformatics» more  CSB 2003»
14 years 2 months ago
Statistical Inference for Well-ordered Structures in Nucleotide Sequences
Distinct, local structures are frequently correlated with functional RNA elements involved in posttranscriptional regulation of gene expression. Discovery of microRNAs (miRNAs) su...
Shu-Yun Le, Jih-H. Chen, Jacob V. Maizel